PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010064P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 368aa    MW: 40142.4 Da    PI: 8.3335
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010064P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-111844127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H+p
  MELO3C010064P1 18 PGEPDCSYYIRTGLCRFGATCRFNHPP 44
                    5789*********************97 PP

2zf-CCCH39.11.2e-126589327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +++C+++++tGtCk+G++CkF+H++
  MELO3C010064P1 65 QPECQYYLKTGTCKFGATCKFHHPR 89
                    799********************96 PP

3zf-CCCH36.48.8e-12111135327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C +++rtG+Ck+G++CkF+H++
  MELO3C010064P1 111 ETECAYYLRTGQCKFGNTCKFHHPQ 135
                     568********************97 PP

4zf-CCCH38.22.4e-12229255127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ C+F+H++
  MELO3C010064P1 229 PGQPECQFYMKTGDCKFGAVCRFHHPR 255
                     5789*********************96 PP

5zf-CCCH40.44.7e-13275301127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  MELO3C010064P1 275 PGEPLCIFYSRYGICKFGPSCKFDHPM 301
                     589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-51744IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5871745IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-81944IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-52245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-42343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1596290IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-66289IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-106589IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-66691IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-56889IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103108136IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6110136IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9111135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4114134IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6228255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596228256IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-9230255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5232257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4234256IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7274301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709274302IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10276301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5277301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4279299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNLGSGEIMG SGSYPVRPGE PDCSYYIRTG LCRFGATCRF NHPPNRELAI ATARMKGEFP  60
ERIGQPECQY YLKTGTCKFG ATCKFHHPRD KAGIAGRVAL NILGYPLRPS ETECAYYLRT  120
GQCKFGNTCK FHHPQPTNMM VSLRGSPIYP TVQSPTPGQQ SYPGGSTNWS RASFIPSPRW  180
QGPSSYASLI LPQGVLSVPG WNAFNDQLGS VSSSESPQQT RENVFPERPG QPECQFYMKT  240
GDCKFGAVCR FHHPRERVLP APDCVLSPIG LPLRPGEPLC IFYSRYGICK FGPSCKFDHP  300
MGIFTYNLSA ASSANAPVQH LFGTSSGTTA LNLSSEGLVE AGSAKPRRLS ISETREMPSD  360
DENDAEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818081e-161LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132561e-161LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443710.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLE5GBK30.0E5GBK3_CUCME; Nucleic acid binding protein
STRINGGLYMA20G36140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-173zinc finger protein 1